Data Download Portal

Datasets for Pediatric Neuroblastoma

OMICS Dataset	Link	Description	Level	Unit	Samples	Atrributes	File type
pediatric neuroblastoma cli	Download	Human Pediatric Neuroblastoma Clinical Clinical Clinical	Clinical	Phenotype	344	12	tsi
pediatric neuroblastoma linear SCNA all gene level	Download	Human Pediatric Neuroblastoma SCNV Gene Predicted copy number values from WGS (GISTIC-style)	Gene	Copy Number Change	336	39583	cct
pediatric neuroblastoma RNAExpression RSEM TPM	Download	Human Pediatric Neuroblastoma RNA expression Gene Expression levels from RNA-Seq (rsem TPM)	Gene	Expression	209	60371	cct
pediatric neuroblastoma RNAExpression TPM norm within tumor	Download	Human Pediatric Neuroblastoma RNA expression Gene Expression levels from RNA-Seq, Z scores of log2(TPM + 1) values within tumor cohort.	Gene	Expression (Normalized Log2ratio zscores)	209	60371	cct
pediatric neuroblastoma SCNA all gene level	Download	Human Pediatric Neuroblastoma SCNV Gene Predicted copy number values from WGS (Continuous) using ControlFreeC	Gene	Copy Number Change	336	39583	cct
pediatric neuroblastoma somatic mutation gene level	Download	Human Pediatric Neuroblastoma Mutation Gene strelka2, mutect2, lancet, and VarDict Java pipeline	Gene	Mutation Status (2 or more identified by strelka2, mutect2, lancet, and VarDict Java)	336	6379	cbt
pediatric neuroblastoma somatic mutation site level	Download	Human Pediatric Neuroblastoma Mutation Mutation Site strelka2, mutect2, lancet, and VarDict Java pipeline	Mutation Site	Mutation Site Status (2 or more identified by strelka2, mutect2, lancet, and VarDict Java)	336	9487	cbt

• *tsi - Mixed data matrix file
• *cct - continuous data matrix file
• *cbt - binary data matrix file
• *cgt - categorical data matrix file

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