| RNAseq (Gene level) |
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RNAseq data, upper quartile normalized |
Gene |
Expression (log2 transformed RSEM) |
95 |
60669 |
txt |
| RNAseq (Isoform level) |
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Linear mRNA isoforms, upper quartile normalized |
Transcript |
Expression (log2 transformed FPKM) |
95 |
108777 |
txt |
| MicroRNA |
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miRNA expression RPM/td>
| miRNA |
Expression (log2 transformed RPM) |
94 |
2582 |
txt |
| Circular RNA |
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Circular RNA expression, upper quartile normalized |
circRNA |
Expression (log2 transformed RSEM) |
95 |
5714 |
txt |
| Gene fusion |
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RNAseq based gene fusion events |
Gene |
Fusion events |
NA |
3458 |
txt |
| Proteomics (Tumor) |
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Proteomics |
Gene |
Expression (Log2 MS1 intensity) |
95 |
11454 |
txt |
| Proteomics (Normal) |
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Proteomics |
Gene |
Expression (Log2 MS1 intensity) |
18 |
9740 |
txt |
| Phosphoproteomics (Tumor) |
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Phosphoproteomics site level data |
Phosphosite |
Expression (Log2 MS1 intensity) |
95 |
48831 |
txt |
| Phosphoproteomics (Normal) |
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Phosphoproteomics site level data |
Phosphosite |
Expression (Log2 MS1 intensity) |
18 |
26385 |
txt |
| Methylation |
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Methylation data |
Gene |
Methylation (beta value) |
95 |
12949 |
txt |
| CNV (log2 ratio) |
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Copy number variations |
Gene |
Copy Number Change (Log2 ratios) |
95 |
60603 |
txt |
| CNV (GISTIC level) |
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Copy number variations |
Gene |
Copy Number Change (GISTIC level) |
95 |
60603 |
txt |
| Mutation (Gene level) |
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Gene level somatic mutation |
Gene |
Mutation Status |
95 |
15487 |
txt |
| Mutation MAF |
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Site level somatic mutation in MAF format |
site |
Mutation |
NA |
88290 |
maf |
| Meta table |
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Sample clinical information |
Clinical |
Phenotype |
95 |
NA |
txt |
| Survival |
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Survival information |
Clinical |
Phenotype |
95 |
NA |
txt |
| Phenotype |
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Derived molecular phenotype scores |
Phenotype |
Phenotype |
95 |
NA |
txt |
