Clinical |
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Clinical annotation |
Clinical |
Phenotype |
200 |
6 |
tsi |
Methylation (Gene level, HM27) |
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Methylation data of tumor samples at CpG-site level (Beta values, Illumina HM27 platform) |
gene |
Beta Values (Val-0.5) |
194 |
13328 |
cct |
Methylation (Gene level, HM450K) |
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Methylation data of tumor samples at Gene level (Beta values, Illumina HM450K platform) |
gene |
Beta Values (Val-0.5) |
194 |
20409 |
cct |
miRNA (Gene level) |
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miRNA expression for tumor samples (Normalized, RPM) |
miRgene |
Expression (RPM, Log2(Val+1)) |
188 |
503 |
cct |
miRNA (isoform level) |
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miRNA isoform expression for tumor samples (Normalized, RPM) |
miRisoform |
Expression (RPM, Log2(Val+1)) |
188 |
14130 |
cct |
Mutation (Gene level) |
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Somatic mutations at gene level SNVs |
gene |
Mutation Status (MutSig2CV) |
192 |
41 |
cbt |
Mutation (Site level) |
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Somatic mutations at site level SNVs |
mutationsite |
Mutation Status (MutSig2CV) |
191 |
16 |
cbt |
RNAseq (HiSeq, Gene level) |
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RNAseq data normalized counts (Illumina HiSeq platform, Gene-level, Normalized log2 RPKM) |
gene |
Expression (RSEM, Log2(Val+1)) |
173 |
19448 |
cct |
SCNV (Focal level, log-ratio) |
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Copy number change at the focal level, GISTIC2 log ratio |
focal |
Copy Number Change (GISTIC2, Log2ratio) |
191 |
16 |
cct |
SCNV (Focal level, Thresholded) |
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Copy number change at the focal level, GISTIC2 thresholded |
focal |
Copy Number Change (GISTIC2, Log2ratio) |
191 |
4 |
cgt |
SCNV (Gene level, log-ratio) |
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Copy number change at the gene level, GISTIC2 log ratio format |
gene |
Copy Number Change (GISTIC2, Log2ratio) |
191 |
24776 |
cct |
SCNV (Gene level, Thresholded) |
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Copy number change at the gene level, GISTIC2 thresholded |
gene |
Copy Number Change (GISTIC2, Log2ratio) |
191 |
19286 |
cgt |