Data Download Portal

Datasets

Datasets for Uterine Corpus Endometrial Carcinoma (CPTAC-UCEC-independent)

OMICS Dataset	Link	Description	Level	Unit	Samples	Atrributes	File type
RNAseq (Gene level)	Download	RNAseq data, upper-quartile normalized, log2 transformed	Gene	Expression (log2(RSEM+1))	168	27218	cct
Proteome (Gene level)	Download	Global proteomics data, median polishing and log2 transformed	Gene	Expression (Log2 ratio)	158	11150	cct
Phosphoproteome (Gene level)	Download	Phosphoproteomics gene level data, median polishing and log2 transformed	Gene	Expression (Log2 ratio)	158	8238	cct
Phosphoproteome (Site level)	Download	Phosphoproteomics site level data, median polishing and log2 transformed	Phosphosite	Expression (Log2 ratio)	158	69895	cct
Acetylproteome (Gene level)	Download	Acetylproteomics gene level data, median polishing and log2 transformed	Gene	Expression (Log2 ratio)	158	4466	cct
Acetylproteome (Site level)	Download	Acetylproteomics site level data, median polishing and log2 transformed	Acetylation site	Expression (Log2 ratio)	158	18174	cct
Methylation (Gene level)	Download	Gene level methylation data	gene	Methylation (median beta value)	138	13139	cct
SCNV (Gene level, log2 ratio)	Download	Gene level copy number data	gene	Copy Number Change (Log2 ratios)	138	27100	cct
SCNV (Gene level, GISTIC thresholded)	Download	Gene level copy number data	gene	Copy Number Change (GISTIC thresholded)	138	27100	cct
MicroRNA	Download	miRNA expression RPM, log2 transformed	miRgene	Expression (log2 transformed RPM)	148	2394	cct
Circular RNA	Download	Circular RNA expression RSEM, upper quantile normalized and log2 transformed	circRNA	Expression (log2 transformed RSEM)	168	5565	cct
Linear mRNA isoforms	Download	Linear mRNA isoforms, upper quantile normalized and log2 transformed	mRNA	Expression (log2 transformed FPKM)	168	74639	cct
N-Glycoproteome (Site level)	Download	Glycoproteomics site level data, median centered and log2 transformed	Glycosylation site	Expression (Log2 ratio)	158	33528	cct
Gene fusion	Download	RNAseq based gene fusion events	Gene	Fusion events	NA	979	txt
Mutation (Gene level)	Download	Gene level somatic mutation, HG38	gene	Mutation Status	138	16528	cbt
Mutation (Category level)	Download	Category level somatic mutation, HG38	gene	Mutation Status	138	16661	txt
Mutation MAF	Download	Site level somatic mutation in maf format, HG38	site	Mutation	NA	99955	maf
Structure variation	Download	WGS based structure variation events	segment	Structure variation	NA	NA	vcf
Targeted proteomics, Direct	Download	Targeted proteomics, Direct, peptide level, ratio	peptide	Targeted proteomics	138	69	cct
Targeted proteomics, IMAC	Download	Targeted proteomics, IMAC, peptide level, ratio	peptide	Targeted proteomics	130	11	cct
Targeted proteomics, PRISM	Download	Targeted proteomics, PRISM, peptide level, ratio	peptide	Targeted proteomics	138	39	cct
Meta table	Download	Sample types, clinical, genotype, and phenotype information	Clinical	Phenotype	139	NA	xlsx

*tsi - Mixed data matrix file
*cct - continuous data matrix file
*cbt - binary data matrix file
*cgt - categorical data matrix file