RNAseq (HiSeq, Gene level, Tumor) |
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RNAseq data RSEM upper-quartile normalized (Illumina HiSeq platform, Gene-level) |
gene |
Expression (RSEM-UQ, Log2(Val+1)) |
140 |
28057 |
cct |
RNAseq (HiSeq, Gene level, Normal) |
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RNAseq data RSEM upper-quartile normalized (Illumina HiSeq platform, Gene-level) |
gene |
Expression (RSEM-UQ, Log2(Val+1)) |
21 |
28057 |
cct |
RNAseq (HiSeq, Gene level, Duct) |
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RNAseq data RSEM upper-quartile normalized (Illumina HiSeq platform, Gene-level) |
gene |
Expression (RSEM-UQ, Log2(Val+1)) |
7 |
28057 |
cct |
Proteome (Gene level, median-normalized intensity, Tumor) |
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Proteomics data, median-normalized intensity |
gene |
Expression (Intensity) |
140 |
11662 |
cct |
Proteome (Gene level, median-normalized intensity, Normal) |
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Proteomics data, median-normalized intensity |
gene |
Expression (Intensity) |
75 |
11662 |
cct |
Phosphoproteome (Gene level, Tumor) |
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Phosphoproteomics gene level data, median-normalized intensity |
gene |
Expression (Intensity) |
140 |
8004 |
cct |
Phosphoproteome (Gene level, Normal) |
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Phosphoproteomics gene level data, median-normalized intensity |
gene |
Expression (Intensity) |
75 |
8004 |
cct |
Phosphoproteome (Site level, Tumor) |
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Phosphoproteomics site level data, median-normalized intensity |
site |
Expression (Intensity) |
140 |
51469 |
cct |
Phosphoproteome (Site level, Normal) |
Download |
Phosphoproteomics site level data, median-normalized intensity |
site |
Expression (Intensity) |
75 |
51469 |
cct |
Phosphoproteome (MultiSite level, Tumor) |
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Phosphoproteomics site level data, median-normalized intensity |
site |
Expression (Intensity) |
140 |
84746 |
cct |
Phosphoproteome (MultiSite level, Normal) |
Download |
Phosphoproteomics site level data, median-normalized intensity |
site |
Expression (Intensity) |
75 |
84746 |
cct |
N-glycoproteome (Peptide level, Tumor) |
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N-glycoproteomics peptide level data |
peptide |
Expression (TMT, Log2ratio) |
140 |
30660 |
cct |
N-glycoproteome (Peptide level, Normal) |
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N-glycoproteomics peptide level data |
peptide |
Expression (TMT, Log2ratio) |
75 |
30660 |
cct |
N-glycoproteome (Site level, Tumor) |
Download |
N-glycoproteomics site level data |
site |
Expression (TMT, Log2ratio) |
140 |
33000 |
cct |
N-glycoproteome (Site level, Normal) |
Download |
N-glycoproteomics site level data |
site |
Expression (TMT, Log2ratio) |
75 |
33000 |
cct |
O-glycoproteome |
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O-linked glycopeptides and IDs |
site |
NA |
NA |
NA |
xlsx |
Methylation (Gene level, Tumor) |
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Gene level methylation data, medain of probe beta values of each gene is used as gene beta value |
gene |
Expression (beta value) |
100 |
13180 |
cct |
Methylation (Gene level, Normal) |
Download |
Gene level methylation data, medain of probe beta values of each gene is used as gene beta value |
gene |
Expression (beta value) |
45 |
13180 |
cct |
SCNV (Gene level, Tumor) |
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Gene level copy number data, ratio |
gene |
Copy Number Change (GISTIC2, Log2ratio) |
140 |
19906 |
cct |
SCNV (Segment level, Tumor) |
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Segment level copy number data, ratio |
segment |
Copy Number Change (GISTIC2, Log2ratio) |
140 |
NA |
cct |
MicroRNA (Gene level, Tumor) |
Download |
miRNA expression TPM, log2(+1) transformed |
miRgene |
Expression (log2 transformed TPM) |
137 |
2416 |
cct |
MicroRNA (Gene level, Normal) |
Download |
miRNA expression TPM, log2(+1) transformed |
miRgene |
Expression (log2 transformed TPM) |
21 |
2416 |
cct |
circRNA (Tumor) |
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circRNA expression RSEM, log2(+1) transformed |
circRNA |
Expression (log2 transformed TPM) |
140 |
3979 |
cct |
circRNA (Normal) |
Download |
circRNA expression RSEM, log2(+1) transformed |
circRNA |
Expression (log2 transformed TPM) |
21 |
3979 |
cct |
Mutation (Gene level, Tumor) |
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Gene level somatic mutation |
gene |
Mutation Status |
140 |
4424 |
cgt |
Mutation (Site level, Tumor) |
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Site level somatic mutation |
site |
Mutation Status |
140 |
6149 |
cgt |
Mutation (MAF) |
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somatic mutation |
- |
Mutation Status |
140 |
- |
maf |
Clinical table |
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Sample clinical information |
Clinical |
Phenotype |
140 |
NA |
tsv |